pydna_epbd

• pydna_epbd package
  • Subpackages
    • pydna_epbd.monitors package
      • Submodules
      • pydna_epbd.monitors.all_monitors module
      • pydna_epbd.monitors.bubble_monitor module
      • pydna_epbd.monitors.coord_monitor module
      • pydna_epbd.monitors.coord_monitor_verbose module
      • pydna_epbd.monitors.energy_monitor module
      • pydna_epbd.monitors.flipping_monitor module
      • pydna_epbd.monitors.flipping_monitor_verbose module
      • pydna_epbd.monitors.melting_and_fraction_many_monitor module
      • pydna_epbd.monitors.melting_and_fraction_monitor module
      • pydna_epbd.monitors.monitor module
      • Module contents
    • pydna_epbd.simulation package
      • Submodules
      • pydna_epbd.simulation.aggregate_outputs_and_write module
      • pydna_epbd.simulation.constants module
      • pydna_epbd.simulation.dna module
      • pydna_epbd.simulation.mc_simulation module
      • pydna_epbd.simulation.simulation_steps module
      • Module contents
  • Submodules
  • pydna_epbd.configs module
    • InputConfigs
  • pydna_epbd.input_reader module
    • read_all_sequences()
    • read_configurations()
    • read_sequences_from_a_file()
  • pydna_epbd.pickle_utils module
    • create_necessary_directories()
    • get_dimension()
    • load_pickle()
    • save_as_pickle()
  • pydna_epbd.run module
    • parse_args()
  • pydna_epbd.version module
  • Module contents