Package index • NEONiso

All functions

R_to_delta(): Convert heavy-to-light isotope ratio to delta values.

calculate_12CO2(): Calculate 12C-CO2 Mole Fractions

calculate_13CO2(): Calculate 13C-CO2 Mole Fractions

calibrate_ambient_carbon_gainoffset(): Calibrate ambient carbon isotope data using gain-and-offset method

calibrate_ambient_carbon_linreg(): Calibrate ambient carbon isotope data using linear regression

calibrate_ambient_water_linreg(): calibrate_ambient_water_isotopes

calibrate_carbon() experimental: Calibrate NEON carbon isotope data using validation data sets.

calibrate_water() experimental: Calibrate NEON water isotope ratios using validation data sets.

carbon_regression_plots(): Make plots of carbon calibration data for debugging

convert_NEONhdf5_to_POSIXct_time(): Convert NEON HDF5 file time to POSIXct

convert_POSIXct_to_NEONhdf5_time(): Convert a POSIXct object to the format used in NEON HDF5 files

correct_carbon_ref_cval(): correct_carbon_ref_cval

correct_carbon_ref_output(): Correct carbon ref output

delta_to_R(): Converts delta value to heavy-to-light isotope ratio

estimate_calibration_error(): Produce estimates of the calibration error.

extract_carbon_cal_data(): Extract only the data corresponding to validation/calibration time periods.

extract_water_calibration_data(): Extract only the data corresponding to validation/calibration time periods.

filter_median_brock86(): Apply a median absolute deviation filter

fit_carbon_regression(): Estimate slope/intercept of carbon isotope calibration regression

fit_water_regression(): Estimate slope/intercept of water isotope calibration regression

get_Rstd(): Return heavy-to-light isotope ratio of primary standard.

ingest_data(): Ingest and stack variables needed in calibration.

loocv(): Leave-one-out cross validation

manage_local_EC_archive(): Manage a local eddy covariance (EC) data archive.

restructure_carbon_variables(): Restructure ingested variables for the carbon isotope system.

restructure_variables(): Restructures data.frames imported by ingest_data to shorten variable names and Wrapper function around restructure_carbon_variables and restructure_water_variables.

restructure_water_variables(): Restructure ingested variables for the water isotope system.

select_daily_reference_data(): Select validation data corresponding to a particular day

setup_output_file(): Structure a new HDF5 file

swap_standard_isotoperatios(): swap_standard_isotoperatios

terrestrial_core_sites(): List terrestrial core sites

terrestrial_gradient_sites(): List terrestrial gradient sites

validate_analyte(): Standardize analyte names

validate_output_file(): Validate output file.

water_isotope_sites(): List sites with water vapor isotope ratios.

write_carbon_ambient_data(): Write calibrated carbon ambient data to file

write_carbon_calibration_data(): Write carbon calibrations to file

write_water_ambient_data(): Write calibrated ambient water isotope ratio observations to file.

write_water_calibration_data(): Write water calibration parameters to file