Source code for model_package.Tardigrade_MOOSE.summarize_micro_macro_force_displacements

import pathlib
import argparse
import sys

import pandas
import numpy
import matplotlib.pyplot

from finite_stVK_calculation import finite_stVK_calculation
from summarize_micro_macro_lateral_displacements import plot_convergence


[docs] def plot_force_displacement(csv_files, plot_labels, output_file, output_csv, convergence_plot=None): '''Plot mutliple force displacement plots against each other :param list csv_files: The csv files containing force results :param list plot_labels: The plot labels, same size as ``csv_files`` :param str output_file: The name of the output file of collected results :param str output_csv: The name of the output csv file :param str convergence_plot: Optional file name for convergence plot :returns: Write ``output_file`` and ``output_csv`` ''' matplotlib.pyplot.figure() dfs = [] final_forces = [] # loop through csvs, plot, and append to output DataFrame for csv_file, label in zip(csv_files, plot_labels): df = pandas.read_csv(csv_file, sep=",") matplotlib.pyplot.plot(df['disp'], df['force'], label=label) final_forces.append(df['force'].values[-1]) df = df.assign(id=[label for i in range(len(df.index))]) dfs.append(df) matplotlib.pyplot.xlabel('Displacement (mm)') matplotlib.pyplot.ylabel('Force (N)') matplotlib.pyplot.tight_layout() matplotlib.pyplot.legend() matplotlib.pyplot.savefig(output_file, dpi=300) # create new dataframe and output csv if output_csv: out_df = pandas.concat(dfs, axis=1) out_df.to_csv(output_csv, header=True, sep=',', index=False) # Convergence plot if convergence_plot: convergence_value, _ = finite_stVK_calculation() elements = [int(label.split(' ')[0]) for label in plot_labels] plot_convergence(convergence_plot, final_forces, '-1*Force (N)', elements, -1*convergence_value) return 0
def get_parser(): script_name = pathlib.Path(__file__) prog = f"python {script_name.name} " cli_description = "Plot mutliple force displacement plots against each other" parser=argparse.ArgumentParser(description=cli_description, prog=prog) # TODO: handle multiple faces to sum forces if needed parser.add_argument('--csv-files', nargs="+", required=True, help="The csv files containing force results") parser.add_argument('--plot-labels', nargs="+", required=True, help="The plot labels, same size as '--csv-files'") parser.add_argument('--output-file', type=str, required=True, help="The name of the output plot") parser.add_argument('--output-csv', type=str, required=True, help="The name of the output csv file") parser.add_argument('--convergence-plot', type=str, required=False, help="Optional file name for convergence plot") return parser if __name__ == '__main__': parser = get_parser() args, unknown = parser.parse_known_args() sys.exit(plot_force_displacement(csv_files=args.csv_files, plot_labels=args.plot_labels, output_file=args.output_file, output_csv=args.output_csv, convergence_plot=args.convergence_plot, ))