Python Module Index

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	`model_package`
	`model_package.Calibrate.build_calibration_map`	Create a yaml file to map calibration results
	`model_package.Calibrate.calibrate_element`	Calibrate micromorphic linear elasticity for a single filter element
	`model_package.Calibrate.joint_probability_distributions`	Create a joint probability distribution plot to summarize calibration results
	`model_package.Calibrate.return_minimum_smith_constraint`	Evaluate the 13 Smith constraints for micromorphic linear elasticity and return the minimum value
	`model_package.Calibrate.summarize_calibration_results`	Summarize results of parameter calibration
	`model_package.Calibrate.summarize_calibration_results_ignore_boundary`	Summarize results of parameter calibration while ignoring elements on the z-boundary"
	`model_package.config_software`	Configure software paths in a YAML file
	`model_package.DNS_Abaqus.build_dynamic_elastic_cylinder`	Create an Abaqus model of an elastic cylinder under dynamic compression
	`model_package.DNS_Abaqus.build_elastic_cylinder`	Create an Abaqus model of an elastic cylinder under static compression
	`model_package.DNS_Abaqus.dynamic_analytical_comparison`	Plot dynamic Abaqus results against an analytical solution
	`model_package.DNS_Abaqus.extract_frames`	Extracts 3D field output from a completed Abaqus simulation to save as 2D image
	`model_package.DNS_Abaqus.extract_history`	Plot Abaqus history output for force versus displacement
	`model_package.DNS_Abaqus.modify_input`	Modify Abaqus input file to output 'COORD' at integration points
	`model_package.DNS_Abaqus.ODBextract_to_XDMF`	Convert Abaqus DNS results to XDMF format
	`model_package.DNS_Ratel.build_options_file`	Write Ratel options file
	`model_package.DNS_Ratel.plot_force_displacement`	Process force-displacement from Ratel DNS results
	`model_package.DNS_Ratel.vtk_to_xdmf`	Convert Ratel DNS results to XDMF format
	`model_package.Filter.bounds_from_DNS`	Create a csv containing the extents of a DNS file
	`model_package.Filter.build_filter_config`	Write the configuration file for the Micromorphic Filter
	`model_package.Filter.collect_multi_domain_errors`	Collect balance equation errors across filter domain studies
	`model_package.Filter.collect_multi_domain_stats`	Collect statistics of a homogenized micromorphic quantity across filter domain studies
	`model_package.Filter.force_bounds`	Create a csv file containing information for a bounding box encompassing all DNS points
	`model_package.Filter.parse_balance_errors`	Parse balance equation errors from Micromorphic Filter standard output
	`model_package.Filter.run_micromorphic_filter`	Run the Micromorphic Filter
	`model_package.Filter.single_macroscale`	Write a single macroscale domain file for the Micromorphic Filter
	`model_package.Filter.visualize_results`	Post-process Micromorphic Filter output
	`model_package.Filter.xdmf_local_paths`	Create a copy of an XDMF file with absolute H5 paths replaced with relative paths
	`model_package.Filter.xdmf_tomfoolery`	Modify an XDMF file by combining elements from separate 'blocks'
	`model_package.peta`	Copy DNS results from the CU Peta library to the output directory
	`model_package.Tardigrade_MOOSE.add_element_blocks_to_mesh`	Take an existing exodus mesh, add element blocks for each element, save with new name
	`model_package.Tardigrade_MOOSE.build_dynamic_Tardigrade_input_deck`	Write a Tardigrade-MOOSE input file for dynamic simulation
	`model_package.Tardigrade_MOOSE.build_Tardigrade_input_deck`	Write Tardigrade-MOOSE input file
	`model_package.Tardigrade_MOOSE.cylinder_from_bounds`	Create a cylinder mesh from the bounds of a DNS file
	`model_package.Tardigrade_MOOSE.finite_stVK_calculation`	Solution for uniaxial stress of a cylinder for finite deformation using the St. Venant-Kirchhoff elasticity model
	`model_package.Tardigrade_MOOSE.plot_dynamic_displacement`	Process displacement vs time from Tardigrade-MOOSE results
	`model_package.Tardigrade_MOOSE.plot_force_displacement`	Process force-displacement from Tardigrade-MOOSE results
	`model_package.Tardigrade_MOOSE.summarize_micro_macro_force_displacements`	Process force-displacement from Tardigrade-MOOSE results
	`model_package.Tardigrade_MOOSE.write_elastic_material_card`	Write elastic Tardigrade-MOOSE input card (.yml)
	`model_package.xdmf_reader_tools`	Functions for reading XDMF files